PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7582_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 449aa    MW: 48785.9 Da    PI: 8.3813
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7582_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115076127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++++ C+++ rtG C++G++C+F+H+p
  Neem_7582_f_1 50 PGEPDCSYYIRTGLCRFGATCRFNHPP 76
                   5789*********************97 PP

2zf-CCCH29.61.2e-09110129827
                    GGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                    ++++tG Ck+G++CkF+H++
  Neem_7582_f_1 110 YYLKTGMCKFGATCKFHHPR 129
                    9*****************96 PP

3zf-CCCH35.71.4e-11153175527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                    +C +++rtG+Ck+G++CkF+H++
  Neem_7582_f_1 153 ECAYYLRTGQCKFGSTCKFHHPQ 175
                    6********************97 PP

4zf-CCCH37.83.1e-12310336127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+f+++tG Ck+G+ C+F+H++
  Neem_7582_f_1 310 PGQPECQFYMKTGDCKFGAVCRFHHPR 336
                    5789*********************96 PP

5zf-CCCH40.16e-13356382127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++lC f++r+G+Ck+G++CkF H++
  Neem_7582_f_1 356 PGEPLCIFYSRYGICKFGPSCKFDHPM 382
                    589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874977IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-85176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-55477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-45575IPR000571Zinc finger, CCCH-type
SMARTSM003560.15106129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4110129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.145110130IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6110129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948148176IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4150175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6151176IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9153175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4154174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596309337IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6309336IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6313339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5315337IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7355382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709355383IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10357382IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5358382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4360380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEFEAGIPMS RGAAVTEGPS LSPSLNQDAL WQMNLRANEA MESGSLPERP GEPDCSYYIR  60
TGLCRFGATC RFNHPPNRKL AIATARIKGE YPERVGQQEC QACNLSSSSY YLKTGMCKFG  120
ATCKFHHPRD KAGIAGRVSL NILGYPLRAN ELECAYYLRT GQCKFGSTCK FHHPQPTNMM  180
VSLRGSPVYP TVQSPTTPGQ QSYAGGITNW SRASFIPSPR WQAPSSYTPL LLPQGMVSVP  240
GWNAYSGQLG SVSSSESLQQ TAGNNQIYGA SHQSEPTNSG SQGTNSPYHS GSVPAGFYAL  300
QRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERLI PVPDCVLSPI GLPLRPGEPL  360
CIFYSRYGIC KFGPSCKFDH PMGIFTYNLS TSSSADTPVR RFLGSSSGTG ALNLSSEGLV  420
EAGSGKPRRL SLSETRQMSS GDDNIDTEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428579.10.0hypothetical protein CICLE_v10011741mg
RefseqXP_006428580.10.0hypothetical protein CICLE_v10011741mg
RefseqXP_006480413.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_015386493.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_015386494.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLV4UQN00.0V4UQN0_9R
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1